Migration: v0.6 → v0.7

v0.7 is backward compatible for CLI indexing, query, validate, patch, and classify workflows. New capabilities are additive.

Extension (VS Code)

1. Update to OntoCode 0.7.0 (Marketplace or release VSIX).
2. Entity Inspector and graph panels use React webviews — same commands, updated UI.
3. Query Workbench, Manchester editor, and reasoner panels remain legacy HTML webviews (unchanged from v0.6).
4. New commands: class/property/import/neighborhood graph commands (see Graph visualization guide).
5. .obo files are indexed and syntax-highlighted; inspector write-back is still Turtle-only.

OntoIndex CLI / crates

• Workspace crates bump to 0.7.0 on crates.io.
• New: ontoindex robot validate|merge|report
• SQL entities / entity tables expose optional obo_id column for OBO-indexed terms.
• Pin CI: cargo install ontoindex-cli --locked --version 0.7.0 or release VERSION=0.7.0.

LSP

New custom methods (additive):

• ontoindex/getGraph — graph export for webviews
• ontoindex/runRobot — ROBOT CLI wrapper

Existing methods unchanged. See LSP API.

Documentation

• Canonical matrix: What ships today
• New guides: Graph visualization, OBO workflows, ROBOT interop

Breaking changes

None intended for v0.6 CLI/LSP consumers. Pre-1.0 APIs may still change between minors — see workspace limits.